Basic Information | |
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Taxon OID | 3300009218 Open in IMG/M |
Scaffold ID | Ga0103848_1000049 Open in IMG/M |
Source Dataset Name | Microbial communities of water from Amazon river, Brazil - RCM1 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Georgia |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12369 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (70.97%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Amazon river | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001881 | Metagenome / Metatranscriptome | 622 | Y |
F049618 | Metagenome / Metatranscriptome | 146 | N |
F056403 | Metagenome / Metatranscriptome | 137 | Y |
F074802 | Metagenome / Metatranscriptome | 119 | N |
F085690 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0103848_100004914 | F085690 | AGGA | MTYLISYYYKNDLEKRYQKHKTMQLAIATANLLIAHGDYVIDSITTEYGEGE* |
Ga0103848_100004917 | F001881 | GGA | MSERAKEFMSAVWQKRNEGADTEEQLVSAILSLAAESVRFYNAQNDLIVLDKNDLLQLAEEIKNETP* |
Ga0103848_10000493 | F049618 | GGA | MKIEITYKASLDQYYAEIWDGPDGIDEQNFVCGSLGECFEQIVMWRTLNSWSYREAKND* |
Ga0103848_10000495 | F056403 | AGGA | MTKIPIGSKWKHKNSNDVYVVMEQYSHRVVLQHALTGTNIKLTVGHLNPDGFADYERIEE |
Ga0103848_10000499 | F074802 | GGA | MTECTCSYLQIGTKTTDTRNLNPDCPLHGTDSVWYNSPEQVKKREGRSQRLRELYDAARKAREKLK* |
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