NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103848_1000049

Scaffold Ga0103848_1000049


Overview

Basic Information
Taxon OID3300009218 Open in IMG/M
Scaffold IDGa0103848_1000049 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12369
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F049618Metagenome / Metatranscriptome146N
F056403Metagenome / Metatranscriptome137Y
F074802Metagenome / Metatranscriptome119N
F085690Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0103848_100004914F085690AGGAMTYLISYYYKNDLEKRYQKHKTMQLAIATANLLIAHGDYVIDSITTEYGEGE*
Ga0103848_100004917F001881GGAMSERAKEFMSAVWQKRNEGADTEEQLVSAILSLAAESVRFYNAQNDLIVLDKNDLLQLAEEIKNETP*
Ga0103848_10000493F049618GGAMKIEITYKASLDQYYAEIWDGPDGIDEQNFVCGSLGECFEQIVMWRTLNSWSYREAKND*
Ga0103848_10000495F056403AGGAMTKIPIGSKWKHKNSNDVYVVMEQYSHRVVLQHALTGTNIKLTVGHLNPDGFADYERIEE
Ga0103848_10000499F074802GGAMTECTCSYLQIGTKTTDTRNLNPDCPLHGTDSVWYNSPEQVKKREGRSQRLRELYDAARKAREKLK*
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