Scaffold Ga0103848_1000015

Overview

Basic Information

• Taxon OID: 3300009218
• Scaffold ID: Ga0103848_1000015
• Source Dataset Name: Microbial communities of water from Amazon river, Brazil - RCM1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16062
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon river
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F004546	Metagenome / Metatranscriptome	433	Y
F024768	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103848_100001514	F024768	GGA	METEIINGHKAVVRHFFKPKEIKPNSRWIGVSGGIVTVEQVKCYPASDHEDEHWYEVYYSWEENGEKRTHHKESFAFQCRYFLILE*
Ga0103848_100001520	F004546	GGAGG	MSKEPKSKDEEFPYDTLPWKLVVKEADGIRKCFFQTEEHRTKHIERYKLNKKDIQLSYKYDI*
Ga0103848_100001539	F000744	N/A	MTETIMQLNVHEIGIILSALQRLDLREEHRIAKDFGSAAALYNKLYTVFERMDQSEVQLSNDVVPSF*