NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103848_1000015

Scaffold Ga0103848_1000015


Overview

Basic Information
Taxon OID3300009218 Open in IMG/M
Scaffold IDGa0103848_1000015 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16062
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F004546Metagenome / Metatranscriptome433Y
F024768Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0103848_100001514F024768GGAMETEIINGHKAVVRHFFKPKEIKPNSRWIGVSGGIVTVEQVKCYPASDHEDEHWYEVYYSWEENGEKRTHHKESFAFQCRYFLILE*
Ga0103848_100001520F004546GGAGGMSKEPKSKDEEFPYDTLPWKLVVKEADGIRKCFFQTEEHRTKHIERYKLNKKDIQLSYKYDI*
Ga0103848_100001539F000744N/AMTETIMQLNVHEIGIILSALQRLDLREEHRIAKDFGSAAALYNKLYTVFERMDQSEVQLSNDVVPSF*

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