Basic Information | |
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Taxon OID | 3300009218 Open in IMG/M |
Scaffold ID | Ga0103848_1000015 Open in IMG/M |
Source Dataset Name | Microbial communities of water from Amazon river, Brazil - RCM1 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Georgia |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16062 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Amazon river | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F024768 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0103848_100001514 | F024768 | GGA | METEIINGHKAVVRHFFKPKEIKPNSRWIGVSGGIVTVEQVKCYPASDHEDEHWYEVYYSWEENGEKRTHHKESFAFQCRYFLILE* |
Ga0103848_100001520 | F004546 | GGAGG | MSKEPKSKDEEFPYDTLPWKLVVKEADGIRKCFFQTEEHRTKHIERYKLNKKDIQLSYKYDI* |
Ga0103848_100001539 | F000744 | N/A | MTETIMQLNVHEIGIILSALQRLDLREEHRIAKDFGSAAALYNKLYTVFERMDQSEVQLSNDVVPSF* |
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