Scaffold Ga0103745_10051147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103745_10051147

Scaffold Ga0103745_10051147

Overview

Basic Information
Taxon OID	3300009196 Open in IMG/M
Scaffold ID	Ga0103745_10051147 Open in IMG/M
Source Dataset Name	Microbial communities of wastewater sludge from Singapore - Sludge1_b2_February
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	593
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.2	Long. (^o)	103.45	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026607	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103745_100511471	F026607	AGGAGG	MMKKFVTTTVALALALSASVALAGTYVTGPLPSEFGGGFIPSDPAILKNVQKASKEGAKLAASVEKCYSKGAANYSKNKPTGVSTCLNDPAKGVLPKFTAKINGIAAKAPGLPPCHNYVADGNLIAGLVKGFNPSVYCQSPSGAFVDGTASF*

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