Scaffold Ga0114983_1065338

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1065338
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 835
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F084239	Metagenome / Metatranscriptome	112	N
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_10653381	F001019	AGGA	MLSYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNEREL
Ga0114983_10653382	F000263	AGAAGG	MTPEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFSIGVREENKKDGH*
Ga0114983_10653383	F092053	AGG	MKLSSEVKEDLKDQADQIIYFEAAMSNEDKAAKAVYERLVEIYKVAFKEGAKK*
Ga0114983_10653384	F084239	N/A	FMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSSNERVYG*