Scaffold Ga0114983_1012002

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1012002
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2498
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F013184	Metagenome / Metatranscriptome	273	Y
F020171	Metagenome / Metatranscriptome	225	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_10120022	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYERLVEIYKVAFKEGAKSK*
Ga0114983_10120024	F001460	GGA	MLGYTESDLNRMINAVHDAKLFYLRYPSDLMDKTELRTDLEMAVSFMQGLWAEGYFD*
Ga0114983_10120025	F013184	GGAG	MKNYAFVIKLAGSVMANNEKEAHNKINAHLDELGEVDSSRYDLGWPEVSWDMEYDLC*
Ga0114983_10120026	F020171	AGGAGG	MSEQFIDTIAEHITGAIQQEISEHLFDQWSAKNLDEGPDYAEHMFMQFASDGLKQQYNEYYGYIEGDEYLL*
Ga0114983_10120028	F001125	N/A	GFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWPSETGWGLNVNELGDNEHKVPVIDWSNKTFTLMEADLQTEVFSQSLDAFVAKYSSQPSMV*