Scaffold Ga0114983_1010988

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1010988
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F022414	Metagenome / Metatranscriptome	214	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_101098810	F022414	AGGCGG	MSKTQETKLAEQLANLADDHWFNPAIFGRYLAEQPLYTVDRIMEMVSYIISEQAKTYELLKTKGTSSEGLLLANELNECIKAYQEVNVINNLTLPKPTVYHIKREEPVIQRQYGWIDIDKNPFDQV*
Ga0114983_10109883	F084239	GGAGG	LTTQTKSSYFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNNSNERVYG*
Ga0114983_10109886	F001019	AGG	MTYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR*
Ga0114983_10109889	F000852	AGGA	MTTKREYLKTQGITVGVRGRFSGAAKVALQEAAAKGITFTAEAPVKKAK*