Scaffold Ga0114983_1002475

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1002475
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6876
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008243	Metagenome / Metatranscriptome	336	Y
F017302	Metagenome / Metatranscriptome	241	Y
F034930	Metagenome / Metatranscriptome	173	Y
F062753	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100247516	F034930	AGGA	MKNFTVKENQAFRLRVKSWKCLSPSDLNSVEFIQESLKDGDVIETSTYNFFMTDEEMKTLAQGLVA*
Ga0114983_10024752	F008243	GGAGG	MHPLEQEIQTISEQCQMGNISLDERNYLLQEIRDIRAAQECAGNEVAFRYIVQACNIAMAVV*
Ga0114983_10024753	F062753	AGG	MKHVLLIAVIALSGCSTIKEYWPRPHDPVMFNQLVAVDVAIEKQNCEKPTWEEVHPVAEQLARYSEWRSDPQATNLRGLEKHVERMAKGGSKTFCEIGKKTAKQRINAAKTAWEGR*
Ga0114983_10024755	F017302	AGG	MKIALIIASVLLVGCATNPEVQKSVSKDQTMDKLAKAALINDMLNSPDAHVRAKGAAIAEKFLIEPKKNIFGF*