Scaffold Ga0114983_1002314

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1002314
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7145
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_10023141	F001915	GGAG	MDWTLAHPLHDVDDIVELADSVFGAETDGILTRDRGIFRKNVTVTATVQLFDKGKEFLAVCRSTNIVDVGIAKVQEQKLLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVRLINEMIDQHILWAHSWGIPVICSTSIRDEHDGFMRIHKKRGFRVNGSYAYIRTEDGMKGLK*
Ga0114983_10023142	F012670	AGG	MKTPHDADVLFGEIRPEGSILTDAEKLEYKKKYLKAKRDQKKAMALATGEKLPKEPKIPLPTGRPKSIVNRVTEYGALFNKLNEERIAKGLAPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0114983_10023144	F040590	N/A	MSYGKVISGGKAMTNGLTKGINNKLKSFEDGHKRSQTLATAVGKAFNQNPLSDQHLNNINVAAAKKFTIPKLPTNV*
Ga0114983_10023145	F001059	AGG	MASYDIEALKADLPTAKDLAQFVYDKTGISLDLVGKPKEDQYMVARNALEGKKVPADFQTELNPYIDRKELIPVDEMKKVPPRPADLPDEGSRVHFFGATNMPHPTDPQSDRKVHISFRKYDNGVVTYQVTGPVEQIAVGERINKFGQKQPEKFAWLDPRTEEIMLRRADGTFTEKGRGLYAFCVGEKGGGIWTLIDRNVLNIAEKNVTNPWA*
Ga0114983_10023146	F006264	N/A	MEDHSIIFRQKLSAQAEACARKTLEWLQKDLQGDRTLHPEDVYYLASAADLLLTMRDAYGKK*
Ga0114983_10023149	F003521	AGGA	MKSLVYRIREYFNRRTKSVDSGKGADVHRKTLAIENGECASRLIKNEDFALLFNLYRFNLLERLEDCRTDPERIENAFNVAGVRDFIGFIEKIEYLGKVAQKSNT*