Scaffold Ga0114983_1001135

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1001135
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10739
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100113510	F031872	GGA	MVESLVVDEWIYDTLTADATLQGLLAVDNRAPSYQQGIYLYYAPEKDPISLRQPQVPYIVVRHLDAGQTDTTSVCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVDTTTPVFFLNRASVSSSIDVSQDGRVDNGISQVYVATITP*
Ga0114983_100113512	F033435	AGGA	LSSIFDNIPKLEGRPNHTVDIERFIGAPGSFTFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQPGDGEINPARRFAQLARDRSDIYLFVVGQFAAAFPINIEEAVDEVPND*
Ga0114983_10011352	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWVQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYVSGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG*
Ga0114983_10011353	F050378	GAGG	MSPEMWVQIGIQAFITIMSIGAAWVALQVRLTRLETQVAHIISTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR*
Ga0114983_10011354	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVTAAMSSVLAFLTMPFKGVEANSLKVGK*