Scaffold Ga0114983_1000810

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1000810
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12852
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042341	Metagenome / Metatranscriptome	158	N
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100081019	F042341	AGG	MSSPRPKSDPPAVQYGEPHFTFRVLGKARPTHKPKCPTPFGYCWKGYGDIHLDPRQSEEEMIDTVVHELVHDAMPYLDEEAVEKAANRIASAMWKLGYRRTIIQ*
Ga0114983_10008105	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGSNLFLVGLSQPMDTPKFDAGGFTEQKMWTVRFAASAAPWTASDGRVGGQVATLASGVPIAALGTGKKLTVNGQVLRIKGQSYKQTSAVIELACIDDNQ*
Ga0114983_10008107	F082694	AGGA	MGTKSSRQILEAAIASHLSAQTELSGVAIYTGDGDDTNVLPKAIVLCDSARTPNDMPQGLGNYSCGTRITIFSSADDNTLAEHRARCAAIAGAMQDLTAIKAVFVAGGDALCYDVTPQSEDEGVNERSWASVFAYDILIVVNPQP*