Scaffold Ga0114983_1000138

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1000138
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28675
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (44.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_10001383	F006262	N/A	LHRYPEDAFSRRVFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQIVRSTSSSDVSVEFAEPGKGGPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMTVVLIAATSYGGDFSNFRREGTFRTGIT*
Ga0114983_100013838	F006107	N/A	MNGVAPRAEKALVDYLASGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPMQRTDLTCEVNMEVELQLSADDTDEADVLTTVAALDSLILPLFDANGASVLDADQDNASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL*
Ga0114983_100013839	F005024	GAG	MRPVVNITVDSSRFDAALKQYLLATTRDLDKAVNARMFYLMVRLFVLVPPKSPASERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGEEMKQAASAVYRKAIGSVGYLRSGVVKAIRVFNKGFSQYDKPKWKPLVKPAGYKAPKKPNAALVAIANQYGLPAENVAVHKGTRAKGFQAVPGWNPTASVLMQSGIADNQLGRVKSIYDSSMQKAYDDELAELSTHLTDALLANGQVLVDNGIDIK*
Ga0114983_100013840	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVADANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLMYQGRTLRILSCRVDASGAYYSLELGAKSK*
Ga0114983_100013845	F001272	N/A	MIKIELTQEQANSLLQLIDVAVKAGGVANARAALPLVDLILNAAQAKPE*
Ga0114983_10001385	F010611	N/A	MPLDSAEAADAWRQKNVRARARNTPPTASEQEDPAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA*