NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114972_10349385

Scaffold Ga0114972_10349385


Overview

Basic Information
Taxon OID3300009187 Open in IMG/M
Scaffold IDGa0114972_10349385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067531Metagenome125Y
F085210Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0114972_103493851F085210GGAMFVIPDADTLVDYLKDFTGSTNDDEIRQCIFLAELAMRNIELPALRNDPYSGTGLAVANSYGQVPIPADMNKPILFLSQSNTGTQPNGTSTGPWIVYDRIGDRDIIGLGMIAAYSLNPVNVPAVIRGQFSEVGQNYQFLPWVGDGTVINLYYYRAWDLLF
Ga0114972_103493852F067531N/ATGREDGKFFIQREQMNTDYIRLRCAEYRKSAEAGWIDPLAPLMPDGKIGYKWMDLPDVIAIRISDRYFGGMPWTAIKNDRTLKAQFYRVVQQEYPEYICYPGGRLPIPIEVPYPAAQGQTKFFKGH*

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