Scaffold Ga0114972_10088722

Overview

Basic Information

• Taxon OID: 3300009187
• Scaffold ID: Ga0114972_10088722
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2048
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F046380	Metagenome / Metatranscriptome	151	N
F048314	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114972_100887223	F046380	GGAG	MNWKTLDQSFETMSQAEALEIVQQEATDLGLPMLEALTWMSDNYEELDSVQKNAFRTAFRGFQRLLAPAA*
Ga0114972_100887225	F015732	N/A	MKMTKVTNLETAVSIVRTSTDKATALADIMNILGVSRSNAFVYHTKASKILFSANNVDEIMGKVSPQYKKVSESVQGTSGTKKAQKLAEIDAFLANAPTPKGNPFASLGA*
Ga0114972_100887227	F048314	N/A	MKDSIEQAAAMLSLGYTEHEIIRIMHIPPSMAEDLIQKAEQWNDTTFVPYTESDLDDMADYFGA*