Scaffold Ga0114972_10014868

Overview

Basic Information

• Taxon OID: 3300009187
• Scaffold ID: Ga0114972_10014868
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5610
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114972_1001486810	F026867	GAG	MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIIPSDFDQWRLTQTGLNLPRPADRLRSAVGKAHALASRSDSRVSWRQIANTLKDEAWLHELREGNGSSAV*
Ga0114972_1001486812	F048834	GGAGG	VAIPSVKDWAVALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLTAVKTGKT*
Ga0114972_1001486814	F009066	N/A	HLAGIIRDLTNDVDAKYRKGQEEHGGALWRRPVWKDAWMEVLDLCTYVHTLKMQLSVIAELALMGAADESVVAAQSRESCRQILAVLQGFPSAQDKK*
Ga0114972_100148688	F042872	AGG	VGSNPTPSEAYGYNDLRRNGNTAVITEPKKKHYQQHSLLIRGGYPAEPAYHPNPAVARMWSAQR*