NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114972_10011951

Scaffold Ga0114972_10011951


Overview

Basic Information
Taxon OID3300009187 Open in IMG/M
Scaffold IDGa0114972_10011951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6275
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013182Metagenome / Metatranscriptome273N
F044925Metagenome / Metatranscriptome153N
F071166Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0114972_1001195111F071166GAGMAPLVSSSFSKIHHLRNGFVKMENLDETGLRFYLHSNKLVDKPILLFPNGMVKLIRALPEFYEIYDQQSLIRAEMIDGGDGDALAAEDEVVYSLNIVTTKVLQINLEISLFKGKLYIFVKKSSWDEKEGIWRPCRGTLPLDRYQDDPEALLSFALSTHAAANDAHAALPMANAANCANTDVAFVRE*
Ga0114972_100119512F044925N/AMTYFTTTAAAAAAASSPRMEMICEPRLVNTPDKTTTFLHFVDSTTVERGFRAAICLDKQPFIPANLGLPKMDSYADAVFLQLAQRGEMFVRYDDPNARTLQINFKEYIGLLHFFRNEWPALESKLFCQARQMRTTEDAIYINPHLVFHHHGSTEYEAKLGSRLLFKARIDSKDPVHDRIHVWLELLEGGGSIELPFRVLSELACGSNTMHYLATLRERYKGSSRKRSQPV*
Ga0114972_100119516F013182AGGAGLLNQRELTGEEMVAKIMDHVEQRLPPDMSADEKRQALFRGIMDKLNELSASLQIRLGPIAKSLMMFRQNRDMNELFAEVQLPELSLKEKSLLYGRMLFKLLDDPDYVSYTTTNPKLLGHLPPKDVWFLTFFAFVTCKRTKGDNLLQLGCSGISSAGKSKLIESVLLTTAHQLLSSTSMSGGDAGVGR*
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