NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114971_10544891

Scaffold Ga0114971_10544891


Overview

Basic Information
Taxon OID3300009185 Open in IMG/M
Scaffold IDGa0114971_10544891 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023342Metagenome / Metatranscriptome210Y
F089877Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0114971_105448911F089877AGGMKIDISSIDRTQFMVHEHSLNGEIVYLIQPQHIGTKWRQDNKHMRSVVVNYAGEVISASFPKFFNWSEQPDLSPVPNSLNHCTVVEKLDGSTLI
Ga0114971_105448912F023342N/ALDGFALAQHLSEYKYIEPDSELVHILEDVTFVKSSLEIEIEIQWVKENFLTISDDVIGKKVNVKQGYKKYENHYITTIRPDTYEVTISYDINKKGGYIVGFENVTFL*

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