Scaffold Ga0114971_10020440

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10020440
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4299
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_100204403	F070857	AGAAG	MKVICIDNSKKPKNVPIEEWVKEGDTYTVTRIVRMGLQKDTYGYLLKEVQLSSRSFPYELYDATRFLPIDLLSNIKEEEKEEVIIEEACLELI*
Ga0114971_100204406	F067397	GGA	MKDLYYELLQANNGEIPQEATIADLARMNDLKIYEWREYERSQSHVKKPKNERSIKGEQS
Ga0114971_100204407	F039943	N/A	MKEVSKGSSLNEHRQEKEYGWKPISSKKKPVKKSSEYTYAFIGVVIGLTMGILTSIFMYKDSQRCNLLLEENKLLKEMLYLKKK*