Scaffold Ga0114971_10005342

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10005342
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8645
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_100053423	F003049	AGGGGG	MKNAKQIIGCRKAKKGEDTKGLGMIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK*
Ga0114971_100053425	F030060	N/A	MTKGIITSESPEIHWEHLNVAGGRVLDLGCAFWTESERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLEEFMAWFDSIGFECYRHDSISFCPEISVIYGRLKC*