Scaffold Ga0114971_10002907

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10002907
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11699
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F073100	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_1000290711	F073100	N/A	MDNTNENNEVNKDAERMLAAIRQTVLITNMSLAAALNTSFIAQYESDQGICNMALKPNNTAVVATTAATGLTIYQSNFFIKDDSIGEQRCIYKCENEDDADEIWDKINDRIHQWSRDEIKSVNIE*
Ga0114971_100029072	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWFVPEHTLNNEAGYDLCALRVKIAKENLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNASLPDYNEANPATWPRLVRVPRYIKTVLERGCAYIPNRAYRNADFGISVAMVNKAMVKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPQSKNLYGSCCDVQPYIVPENNQDCYSCAGVGDIVVPS*
Ga0114971_100029076	F021128	N/A	MKGKMKLKNRNLAPVGGWYYKYEIKRDKLTFPAVVYGSTWSSLISNIQKDCRSNGIEVPENIEQIVEDQICQRQPSDRCWYADGIGDNIAQAIHTVARVADKVLGTKLEHKARGCSSCNRRRNALNSLS*
Ga0114971_100029077	F023326	N/A	MSRIFSGNTGIQKYGIKFPENMDELGIELYCYAISKGEYGRDYCNKHNINLSDFKLLTPYEHFLKAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFAAPEHEPSPFPFLMDRKKQEVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTDEEPLWDSEGFHKVAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLRFDASGHSIALISSMGKPTDRMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYFIKSKKISVETKDDYKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWAREEKPVESTLDDDYSTDDWGED*