Scaffold Ga0114971

Basic Information
Taxon OID	3300009185 Open in IMG/M
Scaffold ID	Ga0114971_10000325 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009185 Open in IMG/M

Scaffold ID

Ga0114971_10000325 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30654
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (38.24%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30654

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (38.24%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038243	Metagenome	166	Y
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_1000032513	F081331	AGAAGG	MKELNFDTLTGNGWIQFKDFLAQSDIAFYKTFAGHEECRCNEGKKKQVEVYVYDHRKYSAVAGVGYEVKCTGELPDGTWIELKAHGLKQDHVDPKAQELLSIWDWSVKNNLTKSKI*
Ga0114971_1000032520	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTGAVKPNSGMGMRDYFAGAALRGYRASEEFSGELPEIVAELSFVDADAMLIEREKQSFNQ*
Ga0114971_100003253	F068824	N/A	MNWTTEQLKEKGYTLAPDGHYYYADNYKPPSRRLLDTLVKHAPKRSLDKVRKAKETSKDCTAKCNPKYTLAITRFSTKTLDVDNLAGGCKPLIDQIRYSKLIPDDNPESVEITFSQVKVKTQAEQRTEVRITKA*
Ga0114971_1000032531	F038243	N/A	MKPKMQYKLVPKGTNEFLELVDFAEEFDHKIIEHPNINVYAHYRDGELYGYSDHVFLPTIYPAFHPKFTRPRDVIQCMNDWITYSQITNSPGYIGVPLKDERINFTNEIMEKLGLTPLKREIYSITT*
Ga0114971_100003255	F080908	N/A	MGGNKMSETPYTSEVERLKECDKDYRSIAAQLSVFCSAAIFALREANKDLEDAQVKCEIIPDPFAAQAIDDMFAQYLESLRDYPEIMAIALKFIQQSR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114971_10000325

Overview

Ecosystem & Geography

Associated Families

Sequences