Scaffold Ga0114971_10000002

Overview

Basic Information

• Taxon OID: 3300009185
• Scaffold ID: Ga0114971_10000002
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 202880
• Total Scaffold Genes: 272
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (22.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050364	Metagenome / Metatranscriptome	145	Y
F051137	Metagenome	144	Y
F060915	Metagenome / Metatranscriptome	132	Y
F064721	Metagenome / Metatranscriptome	128	N
F087204	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114971_10000002132	F051137	N/A	MSKNRVTTCSYFIKRLRDSGYVVDKLFNDYADSDPRSWTAIVDPNVASILVTCYNNHNDLGEEYFEMHDGGQFIPERFKIKTSSIEVIVEYLVKFNINNKSSTYAGA*
Ga0114971_10000002137	F087204	N/A	MIITSTQQVEDMMNPSNAMDLSEFEDITLKVGSFVCIAKKKKFNFLNFLKFVIEDKKTQNIYFKLLNEENFQIIMKAYLNSTPNIYKKIFRSKLNKEKP*
Ga0114971_1000000250	F060915	AGG	MKTKLNWKRIWLDDNSGYWYSAVVPVIGWEYIVDQNYLSRESEEYIAGTYFSKTDDEITRFSKKFYKTEEAAMIACEKHLQDTAEKFTKWMNKK*
Ga0114971_1000000256	F064721	N/A	MTLKQKIVSIVIVGGLFRISEFIANIIMWLMRLFKTRKPHYLYVYLKYEQDFLYPLAEKICYCLGLKREWDVHQEGLDKLHKLIFGEDK*
Ga0114971_1000000273	F050364	AGGA	MIPRKYATYQNTKVGDKIRFRESTMHWFTNRIENAKKLVSGQVYTVKKISVASSSTGVILEETNEEVELTWFDIIEDL*