Scaffold Ga0114976_10393992

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10393992
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 726
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007644	Metagenome / Metatranscriptome	347	Y
F023347	Metagenome / Metatranscriptome	210	Y
F033037	Metagenome / Metatranscriptome	178	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_103939921	F038241	N/A	QMSNAVHDAKLFYIRNSDVEQVDKDPLIEGLLKANDFLQGLWAEGYFD*
Ga0114976_103939922	F007644	GGAGG	LTKSSQFLEYMKIHLISLNQDLEMNPESINVIDIPGQIYATEHLLSVATDIMNNSTNERYE*
Ga0114976_103939923	F023347	GGA	MHGELKNLMLIAEQQLASAIETEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGARDEA*
Ga0114976_103939924	F033037	GGAG	MKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQN