Scaffold Ga0114976_10145891

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10145891
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1328
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_101458912	F098561	GAG	MAITLGKDCTIRLDGGTITSARNVTLTESARTIDVNPYGSRYAATYSTGYECTVSVELNDAGDLGTAFQKMHKGGTFEVRGGAAGFSFLAVLTGISETDPIDGVSSFVLEGKMTDPRLVRE*
Ga0114976_101458913	F056554	AGGA	MAISLGKDGAAPPFGAGIISATYTEECETIDISNRSNVGGSAGGPGRKMSKAGFVTKTWEIECHDATNLIANLEAAGSSFSVMSVSEAISVDGAVVFSVTAKEFT*
Ga0114976_101458914	F034165	GAGG	MPTTSSVNITLGKDVSIGGVSNARSCTVTNSASDVDVTKFGDTSRKFRKAQIEQTIELECVDDPGVTIGSTFTASGTTTGNATYIVTNIAKSFPLDGILTYKVSGSRTIAAS*