Scaffold Ga0114976_10034884

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10034884
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3016
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042869	Metagenome	157	Y
F059768	Metagenome / Metatranscriptome	133	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_100348845	F042869	GGAGG	VNKLIGKDDTIKNYVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGAVVTSVDESKPKYYFFNDRPLPMLDPYRIAMEFYLKERT*
Ga0114976_100348846	F059768	AGGAG	MTFQEQIKALPEEERLKFFRSIMAVVDAGIKAGVPPEEWGKMYADTYKNIEEKM*
Ga0114976_100348847	F093280	AGGAG	VNSKIEALIKATECADVGELFDRSIRLGSFLHQFKQEHGRPMNPTEMKYLEAVVHATPQEKT*