Scaffold Ga0114976_10029144

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10029144
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3329
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093855	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_100291447	F093855	N/A	MKHLKIFEDFEAQGTIYPEIQKMIDENQFLKGKVVADKNTVYEAGDFILLLSDLSHITDAHVDESIPGSKFNKGVDLKKAIINLVSNNKPTQMTKGFGPSETEANTQEAQKFKWLGLDSKTDVGIENVQKSEPNSEEFKSMNVYTYKDSRGNEFKIKVKEGEGEKTTFLSFIGAKLGVIGDKVVLSVMTAFPGKNAVSIANRNDFMKDGYYFTTQNKEVIEKSSGSVSERIR