Scaffold Ga0114976_10024391

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10024391
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3669
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F062447	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_1002439111	F034827	N/A	MKYNITSQDKEALIEFDQIKEGEVFSFFTPESTDRGNHAIYMKIRVPNTTSVNILDLGDGKAYDFSAKKRNSINDPDEKQGNRVYKLNAKINIVIL*
Ga0114976_100243916	F062447	AGAAGG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGLKSFSLQDLKEVLDSVKETLNKV*
Ga0114976_100243917	F032536	AGGA	MSQRQTFEELMRSFRFHKNPILNWFLGEVSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDNKVVTYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQMIVNEEDSEVSLEELYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD*