Basic Information | |
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Taxon OID | 3300009184 Open in IMG/M |
Scaffold ID | Ga0114976_10016791 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4496 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036073 | Metagenome / Metatranscriptome | 170 | Y |
F076813 | Metagenome / Metatranscriptome | 117 | Y |
F080837 | Metagenome / Metatranscriptome | 114 | N |
F102437 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114976_1001679111 | F102437 | AGGAG | MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPIIDKRKLIVAIDRCMTIKDIQRLFYNALLKFEGMGVL* |
Ga0114976_1001679115 | F080837 | N/A | NRSMMNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYVEMEGASK* |
Ga0114976_100167916 | F076813 | AGGAG | MKHSNHFDQNGDIRDIFAAMAMQSLMKQDAATPKWVAHQAYKYADAMLEVREEINDTKPSKDALINECQPY* |
Ga0114976_100167917 | F036073 | AGGAG | MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPDYPTDEQVAGFNHLYVAPFVPFKKEKPYEGEQVNEA* |
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