Scaffold Ga0114976_10016791

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10016791
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4496
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y
F080837	Metagenome / Metatranscriptome	114	N
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_1001679111	F102437	AGGAG	MTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPIIDKRKLIVAIDRCMTIKDIQRLFYNALLKFEGMGVL*
Ga0114976_1001679115	F080837	N/A	NRSMMNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYVEMEGASK*
Ga0114976_100167916	F076813	AGGAG	MKHSNHFDQNGDIRDIFAAMAMQSLMKQDAATPKWVAHQAYKYADAMLEVREEINDTKPSKDALINECQPY*
Ga0114976_100167917	F036073	AGGAG	MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYEKQTLEEYLETVPDYPTDEQVAGFNHLYVAPFVPFKKEKPYEGEQVNEA*