Scaffold Ga0114976_10000047

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10000047
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59503
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F006385	Metagenome / Metatranscriptome	374	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_1000004757	F093845	GGGGG	MIVTLTSTSGATKQMNFDTKAHVLEFIELYKATLHQGQSVCIDAPLVGIHSGWIRGSAPKV*
Ga0114976_1000004769	F006385	AGGAG	MILDTGTLIAIVIALAGSSIMMLVFWKQNIEQQKEIRRLQIALRNERLKK*
Ga0114976_1000004770	F002598	GAGG	MATKLYTIPDLLIGKNYRSRTRHFEGEIVSARPAHPAIWYGENTEAYLIEINYKGSIRNKFATVAVKVGE*
Ga0114976_1000004771	F000447	AGG	MGYIEIFRMNESGAGWVDFSDATPDELFTLEVGLLNEGALFTTKEAD*