Scaffold Ga0114974_10188339

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10188339
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1267
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F090097	Metagenome	108	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_101883391	F040536	AGGAGG	MDELGKVIPFHPVKSPLSLFYEVIEPDGETRWGGERVFDALSWLNLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYKVLKGEL*
Ga0114974_101883392	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRARDRALTRLSQAYPETYKELLELEKVDDGTSGAKWVDIDGNNSLVVVVGTGSKERGIIIESASYFAEGEGERE*
Ga0114974_101883393	F041090	GAGG	VKNETTNGSQENIVQLSAIRRQKHIASSPYGPVSQGLTTLQRTDRDQVLTELLSSLESVVADLNSKSYTALDTLAIAIQGARAALSASTIDEAGTDVL*
Ga0114974_101883394	F100350	GAGG	MIYSFKCECGSTRDIEQSIHAAIEEPMCTDCHQMMSRSWSSPAVTFKGKGFYTTDN*