Scaffold Ga0114974_10102517

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10102517
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1840
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057317	Metagenome / Metatranscriptome	136	N
F084154	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_101025171	F084154	AGG	MAIPILAGIYPALARFGYGVARAIRPSKVASAISKYTPKAVKDIEFSPMVAKGVEGAKQKVSSGYRSLYAGTLGSETKRKVTSGVLATYGTMSFLNRDDEEDTIE*
Ga0114974_101025172	F057317	AGGAG	MVLKTNLANLAQAAKAVGKDVVGAVKAKTKKPVSMVREAGRTIRRNPKKSAAIGAGLAGSTGFYLYNGKRNAYEDDTSME*