Scaffold Ga0114974_10076077

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10076077
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2194
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100760771	F054861	N/A	RELFKSYDVPEHVRRSYRLKWIRSIRHLGDNWLLAKHVTRKKELTQ*
Ga0114974_100760772	F026266	AGGA	MTVETITFNFVGQLEDSCAIVDVQCQIDEDGDCRDLDSVTFKGLDILEVISSNQWEDLEWQASKAYKAENYEKLTIAHDHECALEAVYGLSKPSFNIR*
Ga0114974_100760776	F073554	AGGA	MSIEFFDDGEDLDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHSGYVVAKENEDPLAW*
Ga0114974_100760777	F045754	GAG	MNIDPNKPWPFPSNLVQGDNDAKLIADCLALLQDFTAFQLRGEIYYGYLDTKALKVIEELREAQDNETQLST*