Scaffold Ga0114974_10075657

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10075657
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2201
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100756571	F005697	N/A	MGFLDNYEASRERLERWLRTFPTGRIETRIVEFSADKGYVLVEAKAYRNETDLQPAGIDYAYGYQGAYQQNMKRWFVEDSVTSAIMRVQQLVMGGAERSTKEIMEQVETTPAKIANTDLPDYWAIEAAEKAGIPSLGSSMEEITKQLGGELVKEAPQCSHGHRIWRTGTSAKGKAWANYSCVGRKPNQCDPLWYVLTSDGTWKPQV*
Ga0114974_100756572	F000403	AGG	MGDFMEIVNPQTMTGKLLKDGEVISEYKMEQCDRCSMLTRLDVFGYQKGYGDEKVIWFCKGCR*
Ga0114974_100756573	F021065	AGG	MKITLTREEEFICHDAAIDLAKKNKDYWQTREGGYSQDKSLHELIAQDAQSIGSEWVVAKYLGFTFDPFEQKGKTKADVGSHFEVRWTKYVAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV*
Ga0114974_100756574	F009503	GGAG	METIQFECRKCKKVTKQLVHKVTNNLPDGVEVIQCTKCEFMGIALIGVVSE*