Basic Information | |
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Taxon OID | 3300009183 Open in IMG/M |
Scaffold ID | Ga0114974_10075657 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2201 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F005697 | Metagenome / Metatranscriptome | 392 | Y |
F009503 | Metagenome / Metatranscriptome | 317 | Y |
F021065 | Metagenome / Metatranscriptome | 220 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114974_100756571 | F005697 | N/A | MGFLDNYEASRERLERWLRTFPTGRIETRIVEFSADKGYVLVEAKAYRNETDLQPAGIDYAYGYQGAYQQNMKRWFVEDSVTSAIMRVQQLVMGGAERSTKEIMEQVETTPAKIANTDLPDYWAIEAAEKAGIPSLGSSMEEITKQLGGELVKEAPQCSHGHRIWRTGTSAKGKAWANYSCVGRKPNQCDPLWYVLTSDGTWKPQV* |
Ga0114974_100756572 | F000403 | AGG | MGDFMEIVNPQTMTGKLLKDGEVISEYKMEQCDRCSMLTRLDVFGYQKGYGDEKVIWFCKGCR* |
Ga0114974_100756573 | F021065 | AGG | MKITLTREEEFICHDAAIDLAKKNKDYWQTREGGYSQDKSLHELIAQDAQSIGSEWVVAKYLGFTFDPFEQKGKTKADVGSHFEVRWTKYVAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV* |
Ga0114974_100756574 | F009503 | GGAG | METIQFECRKCKKVTKQLVHKVTNNLPDGVEVIQCTKCEFMGIALIGVVSE* |
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