Scaffold Ga0114974_10055779

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10055779
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2633
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049628	Metagenome / Metatranscriptome	146	N
F059968	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100557792	F059968	GGAG	VGKNTNIEERKLLMVRIKDLRAAGHNIRRTAEIMDMSEKTLHRWIREETPDRPVKKRDPYISLDEKTATVIKWAELIASGETRSKAAEVVGYPIMMINRWMMSEPSLRIEYKECIGKKQSNYGGRKSFESIMTDVRAGRPVWRDGGRFKLQLVEAALMRYELDGANVWRCKGFATLSGNDVMARDWTVIE*
Ga0114974_100557793	F049628	GGA	MKFSEVIQHLMHGKPITRACFDHDVYIRYSDLYEAFVMHTGPESKTLQGLTLDPESLFATDWMWGEDHPVKDEITWTQTKS*