NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10054381

Scaffold Ga0114974_10054381


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10054381 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2674
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F023339Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_100543811F023339N/AQRNGGQVSKKLRAFKKNKQGEMISIVGFGRPKFGNAASSKPSTSKPKSNKCPTCGK*
Ga0114974_100543814F013878AGGMLNLTELGVEVFIKKARSINSFWENYDLVIWKKDPNGFTNKNGMFMAEAWGTAERIVVNNKGIWKLPKKYVRYFK*
Ga0114974_100543816F000473AGGMYIDKSQDKLREHFKYGINQWTGEPNKPVFYTEEMKKRVHQIKKPSMLLMDVVMYPEFLALRLYEDNFLQFEGTKKEIVIDYVGKVKRLIESYGVRCELEGKPSERVL*
Ga0114974_100543817F011938GGAGGVKEYYDTTHVVFIHAEQTHGIVEKLGAWASMVKYNKDGIEHNELLENEEFTIMDEIVFTHVEESN*
Ga0114974_100543818F000671GAGGMEKILCYSCNKPKNKLEVRKSGLLPVNLLICETCHISKLEPRWVVILAGRSHGPEHVKEVVLKRRYLGNEISASELLI*
Ga0114974_100543819F002060N/AMEINYLSVVMAISAALVSGMGTALVAGFRDNKKEKVRRSEREQDHLKLELKDLKIELYKIEKELNDWKDKYYSAIQELIGIKAELEATMIELAHFEHHSDELDR*
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