Scaffold Ga0114974_10052720

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10052720
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2722
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F033034	Metagenome / Metatranscriptome	178	Y
F045702	Metagenome	152	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100527202	F045702	AGTAG	MTITQTLNRTAGRFTTLVVNKGATNNTFCAQITSATDKNVRFYDVNADANRVVPTASVVYARSGKVQFRKPRK*
Ga0114974_100527203	F033034	N/A	MKVAKLTKKAQDIVNQIMSADAVDIDHGRVGERVYYGQMHLTGEGLEFNVNVDGDMGEMIISNESLNAAVVSDGIIEIDGEYIPKNEFGDITITLYKLSKINAV*
Ga0114974_100527204	F089938	N/A	MLNLDQAFTVQEFVRVNRTKRVWEIQDELYSLICILTKEEEKKDETETAAA*
Ga0114974_100527205	F006546	GAG	MKWKYIGNRACDAKKGEQYIVEICEDTENYAKKDMPQFINVVVVQPPSPRNNTFFSMRAGDTIRVCNPYYEMMHYSHPGFVPVKE*
Ga0114974_100527206	F009402	N/A	MKKLEKEFESSGFKYKQIHRENMFAIYERHHISSETKHFEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGTQGYTCLDKKTAYNRLDRIMKEDVINKEIANKKAERKKAK*