Scaffold Ga0114974_10040298

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10040298
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3176
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F051117	Metagenome / Metatranscriptome	144	Y
F069753	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1004029810	F000441	AGGAGG	MKMSDKYINEQLSKAQALLWSGSLHEQDEAHNIISKLIKDRVEQSEGQ*
Ga0114974_100402982	F051117	GGGGG	MTHDHNFQLDLDGQITCSICGAMGDDMPNPEPTGYGYDELKDFDMGLKDNRKSKITPFMGPNR*
Ga0114974_100402986	F069753	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLAEQPIYTLDRIVEVVAWVIEKQARRYEREYQNNGTVSEGLAVSYKLDQVIDKIKLKNNFDHIKLP*
Ga0114974_100402987	F004666	AGGA	MATKREYLKTQGITVGLRGRFSSAATKALSEAEAKGMKFEAEKKSPKK*
Ga0114974_100402989	F001019	GAGG	MTYEPSLEILEVNYSCSPGGIDLFEVYDKSDIPVSIPIYETESLTEAVQFCYNLGKDFIVRTLAEWEERELMHA*