Scaffold Ga0114974_10035898

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10035898
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3395
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F023833	Metagenome	208	Y
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100358981	F010463	AGAAG	VIAHPQELVLAATIHRVKLCEDKLREFEQMVSTLTSTMAQNRAELASKGLEKFVIGVTTHLDIPKELVPTFGKHRAKRNRSHSTVVKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGS
Ga0114974_100358985	F033350	AGGAGG	MSVDVDVPRVKWSMLEWKSPEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0114974_100358986	F023833	GGA	MKSHSDQIQDIINDAMRKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLTDER*