Scaffold Ga0114974_10035425

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10035425
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3420
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100354254	F042872	N/A	MTPQSIIDQIESGNCTVGSNPTPSEAYGYNYLRRNGNTAVITEPKKKHYQQHSFLIRGGYPAEPAYHPNPAVARMWSAQR*
Ga0114974_100354256	F026867	GAG	MSSGRLNDTAIKLRQENRALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRLMQTGLNLPRPADRLRSAVGKAHALASRSDSRVSWRQIANTLKAEAWLHELREGNGSSDV*
Ga0114974_100354259	F048834	AGGAGG	VAIPTVKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLIPAKSRKS*