Scaffold Ga0114974_10033736

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10033736
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F003862	Metagenome / Metatranscriptome	464	Y
F004721	Metagenome / Metatranscriptome	426	Y
F032951	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1003373611	F004721	AGGA	MALGKEGSSLNAELNRLAGTTGKADQGAANAYANTSGKGIIGALNIKASASRQPNNFKGLNAICNELAGTTGKSAVVALRSINV*
Ga0114974_100337362	F003862	N/A	LIDGRARGNSSLTVNSLRRIMATYTFLTPTLEQGLIGNHRLFQFFTQRTKGYTVINNAGVYSLTQYPAQDDLETYTAYYMGGCIHKGITDAIKTAMIAASIGITESNFTAE*
Ga0114974_100337363	F001706	AGTAGG	MKHWEHHPEPIEGCFGCKGLGLQMNSGDAGRDIPDKKWNSELQAYRDARSQGIQPAGTRMKDIIAAHKASETLGKAYNSETMPKAANINKKSVEVLKEIGQI*
Ga0114974_100337367	F032951	N/A	MSSGKFIRHDGFNKTIMRDGLILTLRKDGTVKVQRDPKTGDIIKGNK*