Scaffold Ga0114974_10029107

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10029107
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3835
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100291072	F049625	GAGG	MLSDIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDSNGSPVHMKAWVKVNPYRRKDND*
Ga0114974_100291074	F026266	GAGG	MVDTITFHFVGQLADSCAVVDVQCQIDEDGDCRDLESVTFKGLNILEVISSNQWEDLEWQACKAYKAENLEQLTIDHDNQSTLEAVYGLSKPSFNIR*
Ga0114974_100291076	F054861	AGG	MNTKILKHTRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAQNIQRKDAQS*