Scaffold Ga0114974_10028358

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10028358
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3891
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F029673	Metagenome	187	N
F043820	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100283583	F043820	AGGA	MTKNEAHAHLNRLREGHPMPVSLTTQALLITGDIPRISDKPLCFDSNESTDDRGGEIQNQGIEEGFSYSAYLDSQQNQGVKE*
Ga0114974_100283586	F014489	AGGAG	MELKQQHISILKRLAHGASSLKRFTDKDGEVGNQGFHYLRYLNYLQNFGLALEINETWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLVLPRVSL*
Ga0114974_100283587	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDSYEIDFAVFDEQDKHITYDISKKQYNHCENKASDEMRDITTQWHKEWETCFD*
Ga0114974_100283588	F029673	N/A	MAACNENTITGMSNAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTMRVRE*
Ga0114974_100283589	F015570	GAGG	MNEELDRAFDLLEFDVTDQIRNSVYLAEQRKISTGVTDGSIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*