Scaffold Ga0114974_10027072

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10027072
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3996
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F033321	Metagenome	177	Y
F060700	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1002707215	F000821	AGG	MNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLERANSALSRLFGLEEEADE*
Ga0114974_100270722	F060700	N/A	MKTLRELAQEAGIDEKYFERDFLMLDQRHAIMQDEKGLHLTDVMSWASFSPRTIGRKSNATAKGLQFQLGQYKVWMRQNEQKVG*
Ga0114974_100270729	F033321	AGGGGG	MSRELEVLREEYWRVRSNPIFDNPADYCILLDLIIDRIDVLEGEENE*