Scaffold Ga0114974_10022270

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10022270
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4457
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F014116	Metagenome / Metatranscriptome	265	Y
F023834	Metagenome	208	Y
F093483	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100222701	F014116	GGAG	MAENSADIAKRIILGCVAEGMTIEQACLSAGKSMKTYEYYRRTDKIFTDKIDRTRLG
Ga0114974_1002227012	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIQKEETEKEAGMNLMRMTYALSMVDAYAEGKGEK*
Ga0114974_1002227014	F095162	GGAGG	MGSEKRLASAAKQAVYYRNYRRARDRALVKLSQAYPDTYKELLEKEKVSDEQEGKAWIDLDGTTIAPRIVARAKARGITLTQTDTNQGNDGGEE*
Ga0114974_100222705	F093483	GAG	VRRVTIERVQHSGALIVSALVYHEGLRWLESATYYGYEEGEAKRSFIESCARLRYELEEGEE*
Ga0114974_100222709	F005558	GGAGG	MNQESMSWSELAELTHATQVERFNFCTCEDNEGQDNPYNDCPKENK*