Scaffold Ga0114974_10019704

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10019704
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4778
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F020167	Metagenome	225	Y
F031031	Metagenome	183	Y
F059896	Metagenome	133	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1001970412	F003212	GAGG	MKDKWLVTIEIDTYDGDPRYWDWDAIFVGEDDITVVSSDFKGRVLPTSEGESNE*
Ga0114974_1001970415	F000821	AGGAGG	MNEEYLKAKVDLCLNQAAIDLQQEEIARAIKNLERANSALSRLFGLEEEADE*
Ga0114974_1001970417	F031031	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVIAGDSKLTIAVHTRANA
Ga0114974_100197043	F059896	AGGCGG	MNSCDKCELMARVTVSGYLFPRYLCALHAAQLCESVGDQAGADKFAALIAGDRVSA*
Ga0114974_100197045	F093483	AGGCGG	MVAERVAHSGAIIVSALVYQQGLRWLESSTYYGYTVREAKRSFRESCARLNYEIERG*
Ga0114974_100197048	F020167	GAGG	METISELVNEIYEDNYSHLEFDEAMGGDCDCIVHNTLNTIVKYWHEKEGE*