Scaffold Ga0114974_10015448

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10015448
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5462
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F014116	Metagenome / Metatranscriptome	265	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1001544817	F014116	AGGAG	MADNSADIAKRIILGCVAEGMTIEAACTSAGKSMKTYEYYRRTDKIFTDKVD
Ga0114974_100154485	F083901	GGAGG	MNKQVSGRAAIRHRNYRRARDRALVRLAQLYPDTYKQLLGIERSFDEQEGKKWIGIDGLTNLTVGTHTRANGADAYVNTRDESTNQGNNGGEA*
Ga0114974_100154487	F000821	GGA	MNEEYLAAKANLCLNQAEIDLQQQEIARAIKNLKRANLALYRLGLVREGEADE*