Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10015442 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5465
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F003748	Metagenome / Metatranscriptome	470	Y
F016253	Metagenome / Metatranscriptome	248	Y
F048938	Metagenome / Metatranscriptome	147	Y
F086598	Metagenome / Metatranscriptome	110	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

470

Metagenome / Metatranscriptome

248

Metagenome / Metatranscriptome

147

Metagenome / Metatranscriptome

110

Protein ID	Family	RBS	Sequence
Ga0114974_100154422	F086598	N/A	METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALKRSSCQDDDDDSAWEGFGPKPEKQPFNPNAETYTLEVSCGPQTIRRDDDEDDKTWAGRKKHLMNRRVLFLNSSGVVGTPEQEAYLKEIYDRLTAHGR*
Ga0114974_100154425	F003748	N/A	MFSVNRKDAGGRYIDSEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAEVDGDDLDAKPF*
Ga0114974_100154427	F016253	GGAGG	MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKRVKNYEVSYWTRNKKRKEAK*
Ga0114974_100154428	F048938	AGGAGG	MTREQTIEAIGIMQAFVDGKEVESMYNGVWSIIYVPRWNWDDTQYRIKPTAKLRPWTADEVPLGMQARNPQYPKTRWLIDGTSSTENRQDWLNKKYEHSIDGGKTWLPCGVMEEAK*

Protein ID

Family

RBS

Sequence

Ga0114974_100154422

N/A

METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALKRSSCQDDDDDSAWEGFGPKPEKQPFNPNAETYTLEVSCGPQTIRRDDDEDDKTWAGRKKHLMNRRVLFLNSSGVVGTPEQEAYLKEIYDRLTAHGR*

Ga0114974_100154425

N/A

MFSVNRKDAGGRYIDSEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAEVDGDDLDAKPF*

Ga0114974_100154427

GGAGG

MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKRVKNYEVSYWTRNKKRKEAK*

Ga0114974_100154428

AGGAGG

MTREQTIEAIGIMQAFVDGKEVESMYNGVWSIIYVPRWNWDDTQYRIKPTAKLRPWTADEVPLGMQARNPQYPKTRWLIDGTSSTENRQDWLNKKYEHSIDGGKTWLPCGVMEEAK*

NMPFamsDB