Scaffold Ga0114974_10014384

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10014384
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5684
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y
F030083	Metagenome	186	N
F034899	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1001438415	F034899	AGG	MICPIVIATVRGHGLAVLLESIKQYAPECPVYLRGPESVIEHFDADYKIYGQPRNFG
Ga0114974_100143845	F030083	AGGAG	MKLMHEHITGLCRQPLECWYEWEAAEPEIKEAGVVIEPAIPEQVILIEVWVNGADIFELISDDMKEVIELAIKEDRYK*
Ga0114974_100143847	F001688	GGAG	MWKYLWTELRLMLKTVTPAQAVAHELMHAEHALLQAESGVEYATALVAYNKNRVKRLKAYLANTEEVAT*
Ga0114974_100143848	F011067	AGGAGG	MIRQCDTGMGLCPHRPQCEHICHFTSAGLEPETRKVKAYPTVPEDIEPVPDTWQVIGSVLVGFVLVALGVIAAMMFFTGLWVWSLLI*