Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10012224 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10012224 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6208
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6208

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011646	Metagenome / Metatranscriptome	288	Y
F014714	Metagenome / Metatranscriptome	260	N
F036551	Metagenome	169	Y
F046192	Metagenome	151	Y
F048091	Metagenome	148	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100122241	F014714	N/A	KEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFDLSAIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF*
Ga0114974_1001222410	F036551	GAGG	LAGEGMKETLEVLLSNEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVNKGESK*
Ga0114974_1001222411	F069714	GAG	MNINVKESYMPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELDPEFNFLFFIDELAWEYEAGNSWQVKV*
Ga0114974_1001222414	F006618	GAGG	MSKIKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDTYWRVPNTTPNWVVEWDSEAHEGMSFTHYLDDLTWENN*
Ga0114974_1001222417	F048091	GAGG	MIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWDEQAQEWSNGYIGWSEEKDEGEYLDDDDLIGEQLTSILEIANSENRII*
Ga0114974_1001222421	F046192	AGGA	MAKVMKSTTLLADESGAVWVEAQLSEAQIKRVINSYKRAGIFLTAYGSPNQVIKQVEEINAFFTNDERSRSFVEAGKLQVIGVGF*
Ga0114974_100122245	F011646	GGA	MSNVLELRNGAVKRIIFYEITDAQNIAIWGGETPSEALKWYRESPLDSKIWVSEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10012224

Overview

Ecosystem & Geography

Associated Families

Sequences