Scaffold Ga0114974_10005533

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10005533
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9411
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000553310	F062749	N/A	MKTKLSLFMWALASMFMSFWAVSFAMTGVYYDNSELLTFSISFCASLVSAVCGAGFMQQWMKR*
Ga0114974_1000553313	F044325	N/A	MKQLIQRLLFGYRPNPNATEPKRGSILKYKGHNAEAIHSALVLLKFQLQNAKA*
Ga0114974_100055332	F071219	N/A	MTPHSTDNSIPVIITSITLQAGVWMSDWFGNLNLLGISESFYEYAKIGALFISMWASYRVAIKNKPDDKPRDNES*
Ga0114974_100055334	F042157	N/A	MKLKQKYHAPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPTKTAVIDGDGC*
Ga0114974_100055336	F049410	GGA	MTRNTRYTNGKEIITFVKIDFIVIGGRKIDHVYFRRKDKVDLIMPLVEWNIKGKFEWEIIN*
Ga0114974_100055339	F041191	GGA	MDEKMKLLWNPTKLTCDFIVPEIEKSDGVQKVVGFSRGWHHWNSIRLGIRKENDYCVLYFYAYIKGERTIQRLGRYAIGDLVKCELNWGSYIECKANDGYAFRIAPRHSLPIGYMLYPYAEKDGVEGVQVDIDIEINNLKIS*