Scaffold Ga0114974_10005411

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10005411
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9520
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F030991	Metagenome / Metatranscriptome	183	N
F036110	Metagenome / Metatranscriptome	170	N
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000541113	F008615	N/A	MNTPNTFGAKMFNRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT*
Ga0114974_1000541114	F036110	N/A	MSMEILLFAATVAVSLVGFLLARELNRTSEELKHLRQDVFRLSVDLAKLQTRLDEVI*
Ga0114974_1000541118	F003659	N/A	MPQTLTAADVVGRYLIAKKDVPVYDAPFGTRIGTIRKGNSTPEVYSYLVRQGQVFWVFDYTIPGQGPDAYYALQSPDAFSLSTVPGNVVIAPNVLPGVDVFPAGGTIKKYAIFGALGLLALLILKK*
Ga0114974_1000541120	F030991	N/A	MILEYKGCDKKFFRYELYNGPRMELYVETKLSARATAKLLFRNFGIEHIVLKIYNRTYGLKT*
Ga0114974_1000541122	F011474	GGA	MKEKIDHLTHFDIVVKEELASCTSADEMLHVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS*
Ga0114974_100054113	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0114974_100054114	F006697	N/A	MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSINATAGQQSFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSATINLNDHLNLNITVGNQVVLKDFDPSFNSSNRGLAFDRLHSGFNDNQNLEFRLLTEIVIPPQVNFKAELVLGNALIALNDDITIVFKGYGRIFSAGNSF*
Ga0114974_100054115	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSNTTAALTHTFFKGAAQRAFPVTNVGANGNQFQVNEALLVEKIGFFIPSDATGVGYAGLAGTSVKFDLVIGNKTVIKDASCEFGGEQSFYNDGTIGSSVIDLEGVGILIPPQVEYYVVAKTFATGARTASTVRLGCYLFGTGALLNFNTTI*
Ga0114974_100054119	F070805	N/A	MYLQLAGLEPLNTAENPLAPGAKPYSYDKFYLGQGEDIILPDALYKTSPGGFVDALKKLKTLYQDFQDGKKPTPANVAARAATAAMPSGGVQRASTIQPLNGVTFAAVIGLLTQAIPYVVSILGSFTATVVNNSITNKYQQNAYNVQRLNNMNVNELNLQIQNLDRDIAATNRFNFIQLMALSQFRIVYQQRFDRISGYGLLSNLPGWVLPAALGLGAYLLLRRK*